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{AutoGenprep
965, 960}
I.
Purpose: To extract
genomic DNA from plant material.
II.
Chemical
Principal: Modified CTAB/SDS/KOAc
method.
III.
Pretreatment
of Plant:
A.
50mg (wet)
of plant material is frozen in liquid nitrogen and ground using a pestle
or a
commercially available grinder.
B.
After Plant
lysis solution (Reagent M1) is added, the ground sample is digested
at 65°C
for 30
minutes.
IV.
Protocol Parameters:
A.
Sample
Volume: 0.3 ml of digested solution.
B.
Maximum
Number of Samples: 384 samples (4 plates) per run.
C.
Processing
Time: 2.7 hours for 192 samples (2 plates)
4.4 hours for
384 samples (4 plates)
This includes a 20 minute
drying period.
D.
Yield:
5.0 mg
of purified genomic DNA from 50mg (wet) of young rice [Oryza sativa]
leaf.
Note: The actual yield may vary depending on a number of factors,
including type,
part and maturity of plant material.
E.
Quality:
Typical OD260/280 values are 1.75 - 1.90
The DNA can be used directly in
downstream applications such as fluorescent DNA
sequencing, PCR and restriction endonuclease
digestions.
V. Running
the Protocol:
A.
Load Reagents, Tips and Samples
B.
Select a Protocol
C.
Enter Number of Samples
D.
Start the Run
VI. Example of DNA extracted on the AutoGenprep 965/960:
M 1
2 3
4 5 6
7 8 9 10
11 12
Gel electrophoresis of the extracted Plant DNA
(0.7% agarose gel in TAE, 50Vx1hr)
M: Hind III marker
Lanes 1-12: DNA extracted on the AutoGenprep 965/960
VII. Extraction Process:
| Process Site |
Purpose |
System Process |
| 1. Manual |
Break Plant Cell Wall |
Grind plant in liquid nitrogen. |
| 2. Manual |
Lyse Plant Material |
Incubate ground plant with
Reagent M1. |
| 3. Automated |
Denature Protein |
Add Reagent R1, mix, add Reagent
R2 and mix. |
| 4. Automated |
Remove Debris |
Add Reagent R3, mix, centrifuge
to pellet debris, transfer supernatant to new plate. |
| 5. Automated |
Precipitate DNA |
Add Reagent R4, mix, centrifuge
top pellet DNA, discard supernatant. |
| 6. Automated |
Wash DNA |
Add Reagent R5/6/7, mix, centrifuge
to pellet DNA, discard supernatant. Repeat 2 times. |
| 7. Automated |
Evaporate Alcohol |
Dry DNA on blower station. |
| 8. Automated |
Resuspend DNA |
Add Reagent R9 and mix. |
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