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{AutoGenprep 965, 960}

I.       Purpose:  To extract genomic DNA from plant material.

II.    Chemical Principal:  Modified CTAB/SDS/KOAc method.

III.  Pretreatment of Plant:

A.     50mg (wet) of plant material is frozen in liquid nitrogen and ground using a pestle or a
commercially available grinder.

B.     After Plant lysis solution (Reagent M1) is added, the ground sample is digested at 65°C for 30
minutes.

IV. Protocol Parameters:

A.    Sample Volume: 0.3 ml of digested solution.

B.    Maximum Number of Samples: 384 samples (4 plates) per run.

C.    Processing Time:     2.7 hours for 192 samples (2 plates)
                                  4.4 hours for 384 samples (4 plates)
                                  This includes a 20 minute drying period.

D.    Yield:     5.0 mg of purified genomic DNA from 50mg (wet) of young rice [Oryza sativa] leaf.
              Note: The actual yield may vary depending on a number of factors, including type,                        
                         part and maturity of plant material.

E.     Quality:     Typical OD260/280 values are 1.75 - 1.90
                  The DNA can be used directly in downstream applications such as fluorescent DNA
                  sequencing, PCR and restriction endonuclease digestions.

V.  Running the Protocol:

        A.    Load Reagents, Tips and Samples
        B.    Select a Protocol
        C.    Enter Number of Samples
        D.     Start the Run

VI. Example of DNA extracted on the AutoGenprep 965/960:

   M   1      2     3     4      5     6     7      8     9   10    11     12wpe24.jpg (2697 bytes)

Gel electrophoresis of the extracted Plant DNA
(0.7% agarose gel in TAE, 50Vx1hr)

M: Hind III marker
Lanes 1-12: DNA extracted on the AutoGenprep 965/960

 


VII. Extraction Process:

Process Site Purpose System Process
1. Manual Break Plant Cell Wall Grind plant in liquid nitrogen.
2. Manual Lyse Plant Material Incubate ground plant with Reagent M1.
3. Automated Denature Protein Add Reagent R1, mix, add Reagent R2 and mix.
4. Automated Remove Debris Add Reagent R3, mix, centrifuge to pellet debris, transfer supernatant to new plate.
5. Automated Precipitate DNA Add Reagent R4, mix, centrifuge top pellet DNA, discard supernatant.
6. Automated Wash DNA Add Reagent R5/6/7, mix, centrifuge to pellet DNA, discard supernatant.   Repeat 2 times.
7. Automated Evaporate Alcohol Dry DNA on blower station.
8. Automated Resuspend DNA Add Reagent R9 and mix.